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When running the update from XI3.1 SP2 to SP3 FP3.6...I have two Server intelligence agents running on seperate database schemas and seperate ports. After running the update how do I update the second SIA/CMS database?

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2 clustered servers each running the all services within the SIA on port 6400.

The same BOE installation I have added a second SIA on each server running on seperate ports. These SIA service completely different application and connect to a different CMS database.

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The SP3 or Fix Pack 3.6 does not make changes to the database. Both SIA are updated during the software update.